LYSMD3

Protein-coding gene in the species Homo sapiens
LYSMD3
Identifiers
AliasesLYSMD3, LysM domain containing 3
External IDsMGI: 1915906; HomoloGene: 12722; GeneCards: LYSMD3; OMA:LYSMD3 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for LYSMD3
Genomic location for LYSMD3
Band5q14.3Start90,515,611 bp[1]
End90,529,584 bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]
Chromosome 13 (mouse)
Genomic location for LYSMD3
Genomic location for LYSMD3
Band13|13 C3Start81,805,782 bp[2]
End81,820,990 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • parietal pleura

  • mucosa of paranasal sinus

  • visceral pleura

  • pancreatic epithelial cell

  • palpebral conjunctiva

  • lower lobe of lung

  • Achilles tendon

  • germinal epithelium

  • mucosa of ileum

  • mucosa of sigmoid colon
Top expressed in
  • pineal gland

  • seminal vesicula

  • intestinal villus

  • decidua

  • interventricular septum

  • jejunum

  • parotid gland

  • epithelium of small intestine

  • Gonadal ridge

  • lobe of cerebellum
More reference expression data
BioGPS
More reference expression data
Orthologs
SpeciesHumanMouse
Entrez

116068

80289

Ensembl

ENSG00000176018

ENSMUSG00000035840

UniProt

Q7Z3D4

Q99LE3

RefSeq (mRNA)

NM_001286812
NM_198273

NM_030257

RefSeq (protein)

NP_001273741
NP_938014

NP_084533

Location (UCSC)Chr 5: 90.52 – 90.53 MbChr 13: 81.81 – 81.82 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

LysM and putative peptidoglycan-binding domain-containing protein 3 is a protein that in humans is encoded by the LYSMD3 gene.[5] This protein contains a LysM domain.


References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000176018 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000035840 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: LYSMD3 LysM, putative peptidoglycan-binding, domain containing 3".

Further reading

  • Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC 1347501. PMID 16381901.
  • Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to Biology: A Functional Genomics Pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC 528930. PMID 15489336.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Wiemann S, Weil B, Wellenreuther R, et al. (2001). "Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
  • Hartley JL, Temple GF, Brasch MA (2001). "DNA Cloning Using In Vitro Site-Specific Recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.


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